FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002797857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15371
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACC240.15613818229132784No Hit
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA210.13662090950491185No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG200.13011515190943984No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG200.13011515190943984No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA180.11710363671849587No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN170.11059787912302388No Hit
ATTGAACGTAGGTGCGATAAATAATAGAATGAGGCAGGAATCAAAGACAG170.11059787912302388No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT160.10409212152755187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)