FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002797859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39413
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA520.13193616319488494No Hit
CTTGAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACC500.12686169537969708No Hit
ATTGAACGTAGGTGCGATAAATAATGGGATGGGGCAGGAATCAAAGACAG480.12178722756450916No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN480.12178722756450916No Hit
GTTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGGGGTGGCTTT440.11163829193413341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)