FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002797867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18965
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA280.1476403901924598No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG260.13709464803585553No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA240.12654890587925127No Hit
ATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAG240.12654890587925127No Hit
GTTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGAGGTGGCTTT230.12127603480094912No Hit
GCTGAAGATGGCGGTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGG220.11600316372264699No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT210.11073029264434485No Hit
AGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCT210.11073029264434485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)