FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002797879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16844
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA310.18404179529802897No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG260.15435763476608882No Hit
ATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAG250.14842080265970078No Hit
GTTAAGGATGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGGGGTGGCTTT250.14842080265970078No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC200.11873664212776064No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA190.1127998100213726No Hit
CGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACA190.1127998100213726No Hit
CCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGGCTTAC180.10686297791498457No Hit
GGTGAGAATAGTGTTAATGTCATTAAGGAGAGAAGGAAGAGAAGTAAGCC180.10686297791498457No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT170.10092614580859652No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG170.10092614580859652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)