FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002797936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22559
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA400.17731282415000665No Hit
ATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAG380.16844718294250632No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT360.159581541735006No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT300.13298461811250498No Hit
CTTGAGGAGAGTGACGGGCGGTGTGTACGCGCTTCAGGGCCCTGTTCAAC300.13298461811250498No Hit
GTTGAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGGGGTGGCTTT290.1285517975087548No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACTCTCCTCAAG280.12411897690500465No Hit
TAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTA260.11525333569750432No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA250.11082051509375415No Hit
CCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTC250.11082051509375415No Hit
ATTGAAGAGTATGCAATGAGCGATTTTAGGTCTGTTTGTCGTAGGCAGAT250.11082051509375415No Hit
GGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTC240.106387694490004No Hit
TGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCAC240.106387694490004No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN230.10195487388625384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)