FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002797943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60478
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG820.1355864942623764No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA800.1322795065974404No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA750.12401203743510036No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA690.11409107444029234No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG690.11409107444029234No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA670.11078408677535634No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC660.10913059294288831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)