FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31676
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT550.17363303447404976No Hit
GTTGAGGGTGGATAGGTTTGTTGGTATCCTAGTGGGTGAGGGGTGGCTTT550.17363303447404976No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG450.14206339184240432No Hit
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA440.1389064275792398No Hit
ATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAG410.12943553478974618No Hit
ATCTGAGGGGGGTCATCCATGGGGACGAGAAGGGATTTGACTGTAATGTG350.11049374921075894No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA340.1073367849475944No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT340.1073367849475944No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG340.1073367849475944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)