FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65288
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1230.1883960298982968No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1100.16848425438059061No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA970.14857247886288444No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA940.1439774537434138No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG850.13019237838500183No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC840.1286607033451783No Hit
ACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCAC770.11793897806641343No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG740.11334395294694277No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC720.11028060286729569No Hit
GTACAATATTCATGGTGGCTGGCAGTAATGTACGAAATACATAGCGGTTG700.10721725278764857No Hit
GTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCC680.10415390270800146No Hit
GTACAAGGAAGGGGTAGGCTATGTGTTTTGTCAGGGGGTTGAGAATGAGT670.10262222766817793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)