FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65288
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1020.1562308540620022No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT990.15163582894253155No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC960.1470408038230609No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA950.14550912878323735No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG950.14550912878323735No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC840.1286607033451783No Hit
ACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCAC750.11487562798676633No Hit
GTACAATATTCATGGTGGCTGGCAGTAATGTACGAAATACATAGCGGTTG710.10874892782747213No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA700.10721725278764857No Hit
AGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCA690.10568557774782501No Hit
ATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCT670.10262222766817793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)