FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32594
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGAATATTGCACGGTACCATAAATACTTAACCACCTGTAGTACATAA560.17181076271706447No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT520.1595385653801313No Hit
ATTGAACGTAGGTGCGATAAATAATGGAATGAGGCAGGAATCAAAGACAG500.15340246671166471No Hit
GTTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGAGGTGGCTTT390.11965392403509849No Hit
CTTGAGGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGCCCTGTTCAAC390.11965392403509849No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAAACA390.11965392403509849No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT390.11965392403509849No Hit
CCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAA360.1104497760323986No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT340.10431367736393202No Hit
ATCTGAGGGGGGTCATCCATGGGGACGAGAAGGGATTTGACTGTAATGTG330.10124562802969872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)