FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32594
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGAATATTGCACGGTACCATAAATACTTAACCACCTGTAGTACATAA580.17794686138553106No Hit
GTTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGAGGTGGCTTT510.156470516045898No Hit
ATTGAACGTAGGTGCGATAAATAATGGAATGAGGCAGGAATCAAAGACAG460.14113026937473153No Hit
GTTGAAATCTCCTAAGTGTAAGTTGGGTGCTTTGTGTTAAGCTACACTCT400.12272197336933177No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT380.11658587470086519No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG330.10124562802969872No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAAACA330.10124562802969872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)