FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19236
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA390.20274485339987522No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA290.15075899355375338No Hit
CTTGAGGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGCCCTGTTCAAC270.140361821584529No Hit
ATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAG270.140361821584529No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG250.12996464961530463No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT250.12996464961530463No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG220.11436889166146808No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT210.10917030567685589No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN210.10917030567685589No Hit
ATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTT200.1039717196922437No Hit
CTAGAATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAG200.1039717196922437No Hit
GTTAAGGGTGGGTAGGTTTGTTGGTATTCTAGTGGGTGAGGGGTGGCTTT200.1039717196922437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)