FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48570
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT810.16676961087090797No Hit
CTTGAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACC630.12970969734403953No Hit
GTCTAGGCCATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCCACCG570.11735639283508338No Hit
TAATAGAATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTGCTC570.11735639283508338No Hit
GTTGAAATCTCCTAAGTGTAAGTTGGGTGCTTTGTGTTAAGCTACACTCT550.11323862466543133No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG550.11323862466543133No Hit
ATTGAAGAGTATGCAATGAGCGATTTTAGGTCTGTTTGTCGTAGGCAGAT540.11117974058060531No Hit
CCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCG530.1091208564957793No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG510.10500308832612724No Hit
CTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAAT490.1008853201564752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)