FastQCFastQC Report
Wed 8 May 2024
EGAF00002798089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92129
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1340.14544823019896014No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA1120.12156867001704133No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG1100.11939780090959415No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC1070.11614149724842342No Hit
GTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATC1070.11614149724842342No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1070.11614149724842342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)