FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002798130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106225
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATGGTACCGTGCAATATTCATGGTGGCTGGCAGTAATGTACGAAATAC1630.15344787008707933No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1570.1477994822311132No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG1470.13838550247116968No Hit
CCCTTAATAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA1450.13650270651918098No Hit
CTATTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGAGGTGGCT1450.13650270651918098No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1370.1289715227112262No Hit
TAATAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGT1340.1261473287832431No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA1230.11579195104730523No Hit
GTACCATAAATACTTAACCACCTGTAGTACATAAAAACCCAATCCACATC1200.11296775711932219No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC1120.10543657331136738No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA1090.10261237938338431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)