FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21935
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAG380.1732391155687258No Hit
CCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACATAA290.13220879872350125No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT270.12309095053567357No Hit
GTTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGGGGTGGCTTT250.11397310234784591No Hit
CGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGC250.11397310234784591No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG230.10485525416001823No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT230.10485525416001823No Hit
GCAGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTT230.10485525416001823No Hit
GATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCA220.1002963300661044No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG220.1002963300661044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)