FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78123
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1460.1868847842504768No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1340.17152439102441022No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC1170.14976383395414922No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG1010.1292833096527271No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA1000.12800327688388824No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG970.12416317857737158No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA970.12416317857737158No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA930.11904304750201605No Hit
ACTATAACCACCCTAACCCTAACTTCCCTAATTCCCCCCATCCTTACCAC910.11648298196433829No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCAC870.11136285088898276No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT820.10496268704478834No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT800.10240262150711057No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG790.1011225887382717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)