FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002798236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124736
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1770.14189969214982043No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC1570.1258658286300667No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG1400.11223704463827604No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1350.1082285787583376No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1310.10502180605438687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)