FastQCFastQC Report
Wed 8 May 2024
EGAF00002798243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75529
Total Bases10.7 Mbp
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA980.12975148618411472No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG950.12577950191317244No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA910.12048352288524938No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT830.10989156482940328No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG790.10459558580148023No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC760.10062360153053794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)