FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002798249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127442
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCAAACTTTGCAAGGAGAGCCAAACTTTGCAAGGAGAGCCAAACTTT5380.42215282246041336No Hit
GTTTGGCTCTCCTTGCAAAGTTTGGCTCTCCTTGCAAAGTTTGGCTCTCC3470.27228072378022944No Hit
GTTTAGCTCTCCTTGCAAAGTTTGGCTCTCCTTGCAAAGTTTGGCTCTCC2240.17576623091288587No Hit
GAGCTAAACTTTGCAAGGAGAGCCAAACTTTGCAAGGAGAGCCAAACTTT2220.17419688956544938No Hit
GTTTAGCTCTCCTTGCAAAGGTTGGCTCTCCTTGCAAAGTTTGGCTCTCC1800.14124072126928328No Hit
TTGCAAGGAGAGCCAAACTTTGCAAGGAGAGCCAAACTTTGCAAGGAGAG1690.13260934385838263No Hit
CTTTGCAAGGAGAGCCAAACTTTGCAAGGAGAGCCAAACTTTGCAAGGAG1630.1279013198160732No Hit
CCTTGCAAAGTTTGGCTCTCCTTGCAAAGTTTGGCTCTCCTTGCAAAGTT1610.1263319784686367No Hit
AAGTTTGGCTCTCCTTGCAAAGTTTGGCTCTCCTTGCAAAGTTTGGCTCT1300.10200718758337127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)