FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002798250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127442
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCAAACTTTGCAAGGAGAGCCAAACTTTGCAAGGAGAGCCAAACTTT4760.37350324068988244No Hit
GTTTGGCTCTCCTTGCAAAGTTTGGCTCTCCTTGCAAAGTTTGGCTCTCC4520.3546711445206447No Hit
GTTTAGCTCTCCTTGCAAAGTTTGGCTCTCCTTGCAAAGTTTGGCTCTCC2440.19145964438725066No Hit
CCTTGCAAAGTTTGGCTCTCCTTGCAAAGTTTGGCTCTCCTTGCAAAGTT1960.15379545204877512No Hit
GTTTAGCTCTCCTTGCAAAGGTTGGCTCTCCTTGCAAAGTTTGGCTCTCC1890.14830275733274745No Hit
GAGCTAAACTTTGCAAGGAGAGCCAAACTTTGCAAGGAGAGCCAAACTTT1660.13025533183722793No Hit
TTGCAAGGAGAGCCAAACTTTGCAAGGAGAGCCAAACTTTGCAAGGAGAG1370.10749988229939893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)