FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11294
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN410.3630246148397379No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG150.1328138834779529No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG130.11510536568089251No Hit
ATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCC130.11510536568089251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)