FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38166
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC770.20175024891264476No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG500.13100665513808102No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA450.11790598962427293No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA450.11790598962427293No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT430.11266572341874967No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA430.11266572341874967No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG390.10218519100770321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)