FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29862
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT500.1674368762976358No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN470.15739066371977764No Hit
ATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAG440.1473444511419195No Hit
GTTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGTGAGGGGTGGCTTT390.1306007635121559No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG350.11720581340834506No Hit
GCTGAAGATGGCGGTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGG340.11385707588239234No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA320.10715960083048691No Hit
CGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGC320.10715960083048691No Hit
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA310.10381086330453419No Hit
GTCGGATACAGTTCACTTTAGCTACCCCCAAGTGTTATGGGCCCGGAGCG310.10381086330453419No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG310.10381086330453419No Hit
GTCTAGGCCATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCCACCG300.10046212577858146No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT300.10046212577858146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)