FastQCFastQC Report
Wed 8 May 2024
EGAF00002798383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96828
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAAACA1270.13116040814640392No Hit
TTATGGTACCGTGCAATATTCATGGTGGCTGGCAGTAATGTACGAAATAC1170.1208328169537737No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1130.11670178047672163No Hit
GTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATC1030.10637418928409138No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA1010.10430867104556532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)