FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85542
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC1490.17418344205185757No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1360.1589862289869304No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG1300.1519721306492717No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA1090.12742278646746627No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1070.1250847536882467No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA960.1122255734025391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)