FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85542
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1440.16833836010380865No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1060.12391573729863693No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC1020.1192396717401978No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG930.10871852423370976No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA920.10754950784409997No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC880.10287344228566084No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA880.10287344228566084No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA870.10170442589605105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)