FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30164
Sequences flagged as poor quality0
Sequence length32-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAAGGGTGGGTAGGTTTGTTGGTATCCTAGTGGGCGAGGGGTGGCTTT530.17570613976926136No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT370.12266277682005039No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN360.1193475666357247No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG340.11271714626707333No Hit
CTTGAGGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGCCCTGTTCAAC320.10608672589842195No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT320.10608672589842195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)