FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12616
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN370.293278376664553No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA160.12682308180088775No Hit
ATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCC150.11889663918833228No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCAC140.11097019657577678No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC130.1030437539632213No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA130.1030437539632213No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA130.1030437539632213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)