FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84416
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1300.15399924184988628No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1030.12201478392721758No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA990.11727634571645186No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG980.11609173616376042No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG970.11490712661106899No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA870.10306103108415467No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC850.1006918119787718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)