FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84416
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1300.15399924184988628No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG1160.1374147081122062No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT1150.1362300985595148No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA1070.12675322213798332No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA990.11727634571645186No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG880.1042456406368461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)