FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10892
Sequences flagged as poor quality0
Sequence length32-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACA210.1928020565552699No Hit
GTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAG160.14689680499449137No Hit
CTTGAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACC150.13771575468233566No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA130.11935365405802423No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT130.11935365405802423No Hit
CGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGC130.11935365405802423No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG130.11935365405802423No Hit
GTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTGAA120.11017260374586854No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA120.11017260374586854No Hit
CATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAA120.11017260374586854No Hit
CTTGAGGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGCCCTGTTCAAC110.10099155343371283No Hit
GCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCC110.10099155343371283No Hit
CAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCAC110.10099155343371283No Hit
ATTGAAGAGTATGCAATGAGCGATTTTAGGTCTGTTTGTCGTAGGCAGAT110.10099155343371283No Hit
ATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCA110.10099155343371283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)