FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67475
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3110.460911448684698No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC830.12300852167469432No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG720.10670618747684328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)