FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24006
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG390.16245938515371156No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA320.1333000083312505No Hit
ATATTATGCTTGGCTATAATTTTTCATCTTTCCCTTGCGGTACTATATCT310.12913438307089894No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATATTTGAG300.12496875781054737No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN290.12080313255019579No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGCTATAATTTTTCATCT280.11663750728984422No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG280.11663750728984422No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATT280.11663750728984422No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC270.11247188202949263No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT260.10830625676914105No Hit
CATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGC260.10830625676914105No Hit
TTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCA250.10414063150878947No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC250.10414063150878947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)