FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31692
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG510.1609238924649754No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT430.13568092894105768No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC430.13568092894105768No Hit
CCCTTAACAGTACATAGTACATGAAGCCATTTACCGTACATAGCACATTA350.11043796541713997No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCAC350.11043796541713997No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA340.10728259497665026No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA340.10728259497665026No Hit
GTACAATATTCATGGTGGCTGGCAGTAATGTACGAGATACATAGCGGTTG340.10728259497665026No Hit
ATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCC340.10728259497665026No Hit
ACTATATCTATTGCGCCAGGTTTCAATTTCTATCGCCTATACTTTATTTG330.10412722453616054No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG330.10412722453616054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)