FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23683
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG370.15623020732170756No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT360.15200776928598572No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG320.13511801714309843No Hit
ATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCA290.12245070303593296No Hit
ACTATATCTATTGCGCCAGGTTTCAATTTCTATCGCCTATACTTTATTTG280.11822826500021112No Hit
CTAATACACCAGTCTTGTAAACCAGAGATGAAAACCTTTTTCCAAGGACA260.10978338892876746No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA260.10978338892876746No Hit
GTAATATTGAACGTAGGTGCGATAAATAATAGAATGAGGCAGGAATCAAA250.10556095089304565No Hit
TCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCC240.10133851285732381No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG240.10133851285732381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)