FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002798540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40710
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG620.1522967329894375No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATT620.1522967329894375No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG540.13264554163596168No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC520.12773274379759272No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG500.12281994595922378No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN490.1203635470400393No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA440.10808155244411692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)