FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13831740
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG234060.16921949082328036No Hit
GCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGGGAATGTTCGC206400.14922200677572017No Hit
GTCTAGGTCGGGGCAGGAAGGAAGTTACTAGGCTAATTTATATACGTCAC186600.1349071049629331No Hit
CCTGGATCGTGCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGG172590.12477822746812764No Hit
GTCTAAATTGACCCTGACAACTTACAGTGCGTCTAGGTCGGGGCAGGAAG170630.12336119678362954No Hit
GTGATGATTTGGTAAGAGATAATTTAATAGTACGAGGGCGTTCATGATTC161020.11641340858055459No Hit
GTAGAGAGTATGTTAATTGGGAAATGAAGCAATAATGATGTGGCTTATGCTTACTGGTAAAAAGACTTTGTAATG156820.11337691425663003No Hit
GCCCTGGATCGTGCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGGGAATGTTCGCGAATATATGCTGA150750.10898845698372006No Hit
CCTAAATCAAGACACAGCACCCTTTAATTATACAGACGATGGACAACAATAAAGTGTACAGACCACAGCTCAAAA142650.10313236078757987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)