FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13831740
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT1402271.0138059275261102No Hit
GATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCC356680.2578706655850963No Hit
AAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCC315450.22806241297190374No Hit
AAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTTA282750.20442113573563414No Hit
GTTTTCTCAAACTTCACTAGTGCTGTGTTATTAACATTAATTATTGTCTTATTCTATTCTCTTGGATGAATATTA204830.14808693627844363No Hit
CCCCACCTCCCTTCACCTCCCTATGATTCGCCCTTTCCCGTCCACAGAGA151250.10934994440323488No Hit
CCTAGACGCACTGTAAGTTGTCAGGGTCAATTTAGACACCACTCCCCTTA150190.10858359107386345No Hit
AGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTC144860.1047301351818354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)