FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18245734
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCTGAGAAACTGATG528220.2895032888235683No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCA426920.23398346155874025No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA314220.17221559845167095No Hit
CGATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCTGAGAA287550.15759848302074336No Hit
CGTGGACATCCGCAAAGACCTGTACGCCAACACAGTGCTGTCTGGCGGCA278120.15243015161790696No Hit
CAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAAC223700.12260400157099735No Hit
CCTCACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACG207340.11363752206406166No Hit
CTCATGAGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTCAGG205880.11283733501759917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)