FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15126856
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA693960.4587602341160648No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA357630.2364205754321982No Hit
GCCCTCTTCAAAAACTTCTCCACAACCCTCTGCACCCAGTTTTCCTTGGGGTCCAGACAGAGCTCTCTTCCATC257420.17017415912467204No Hit
GGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAATGTAATGCAC215290.14232303130273732No Hit
GGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAAT187180.12374018765036171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)