FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002798657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19821249
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCATTGCATTCAGCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGA469370.23680142457218512No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA405610.2046339259448282No Hit
GTGGATGTTTTGGTACAACTTATAGAAAAGGTAAAGGAAACCCCAACATGCATGCACTGCCTTGGTGACCAGGGA304090.1534161646422988No Hit
CCCGAGGCTTAGCTTTCATTATCACTGTCTCCCAGGGTGTGCTTGTCAAA274720.1385987331070812No Hit
CCCCAACATGCATGCACTGCCTTGGTGACCAGGGAAGTCACCCCACGGCT252470.1273734061864618No Hit
CTCCCATCTTGCGCAAGTTGGTCACGTGGTCACCCAATTCTTTGATGGCT202230.10202687025424079No Hit
GTCTCAATGAAGTCACACAAATGGGGGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTC201780.10179984117045299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)