FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17724529
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAGCA329780.18605854068110922No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA325310.18353661188965867No Hit
CAAACTAAGAATACCATCAAGTGGTTCCTCGGGAGACAGACAGCGGGTGCTAACGTCCGTTGTCAAGAGGGAAAC281310.1587122568955147No Hit
GAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG256840.14490653037945325No Hit
CTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCTGTGA223950.12635032502133062No Hit
CCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATGCAAGTCGGAC198380.11192398963041557No Hit
CTAAGAATACCATCAAGTGGTTCCTCGGGAGACAGACAGCGGGTGCTAAC197090.11119618467717816No Hit
GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAA182650.10304928272000909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)