FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19100276
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG540910.2831948606397101No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG363500.1903113860763059No Hit
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC265620.1390660532863504No Hit
CTCCCACTGTTTGTATGCATCAGGTTTCAGGTTCTATTTCACTCCCCTCC238540.12488824768814859No Hit
CGGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATT233820.12241707920869833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)