FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16518478
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1607260.9730073194394786No Hit
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGG431670.26132552890163363No Hit
CCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGTATTCTGCAATAGC365850.22147924282128173No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT323390.1957746954652844No Hit
GGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAAT315350.19090741895227878No Hit
GCCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGC300480.18190537893382186No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA246890.14946292267362646No Hit
CCTGTAGCTCTCAAAGCAAATTTTGAGCTCATTTTTCTTTTTCTGCAAGC238130.14415977065199348No Hit
CTCCATTGCATTCAGCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGA235150.14235573035239688No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT223090.13505481558288845No Hit
CCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGTATTCTGCAATAGC180280.10913838429908616No Hit
GGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAATGTAATGCAC176890.10708613711263228No Hit
CTGTAGCTCTCAAAGCAAATTTTGAGCTCATTTTTCTTTTTCTGCAAGCT166180.10060248892180018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)