FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15649722
Sequences flagged as poor quality0
Sequence length35-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA880620.5627064813036295No Hit
CTCCATTGCATTCAGCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGA298330.19062958434661012No Hit
GGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAAT266990.17060366950927308No Hit
GTCTCAAACATGATCTGGGTCATCTTCTCGCGGTTGGCCTTGGGGTTCAG182190.11641740345291758No Hit
CTCCAGGAAGTCACAGAGATGGGGGTCCGTGCGGGCAGAACCCAGGGCAT170230.1087750951742146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)