FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14408293
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA305970.21235686975549428No Hit
GGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAAT292250.2028345758932026No Hit
CTCCATTGCATTCAGCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGA274200.19030706829740346No Hit
GGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAATGTAATGCAC197550.13710853881164134No Hit
GTCTCATAGTAATCTACCACAAAGTTGCGAGGAAGCTTCCTCGCGGTGTA182020.126330023966059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)