FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14408293
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAAC382660.2655831610309424No Hit
CAGCTAGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAAC283370.19667145858291468No Hit
GTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCTGAGAAACTGATG268620.18643429863620903No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA171460.11900091148895986No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAGCA170880.11859836553851313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)