FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15817487
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA409080.258625153287624No Hit
GGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAAT397050.2510196467997729No Hit
GTCTCATAGTAATCTACCACAAAGTTGCGAGGAAGCTTCCTCGCGGTGTA297910.1883421810304001No Hit
GGTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCACATTTTTTTCCAAATGTAATGCAC292040.18463109847980277No Hit
GCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAGATTCGGCCACCTCGTTGGTTCTGC232440.1469512824635165No Hit
CTCCATTGCATTCAGCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGA203560.12869300919924892No Hit
CCCAGGGTGTGCTTGTCAAAGAGATATTCCGCCAAGCCAGATTCGGGCGC200900.12701132613543478No Hit
GTTTGGAATACCACAGCTGGCTGGGAGCAGAGGCTGCTGGTCTCATAGTA196100.12397671008043186No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT177800.11240723637073323No Hit
GTCGGAGATTCGTAGCTGGATGCCGCCATCCAGAGGGCAGAGGTCCAGGTCCTGGAAGGAGCACTTCATCTGTTT175950.11123764476620086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)