FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002798744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002798744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15817487
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTAGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAAC532350.3365578868501678No Hit
CAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAAC393830.24898392519620846No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA269950.17066554251000807No Hit
GTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAACATGCTGAGAAACTGATG266820.16868671995747492No Hit
GCTAGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCT261900.16557623850109693No Hit
CCTCACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACG238360.15069397559802009No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAGCA220010.13909289130441516No Hit
GTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATGCAA164880.10423906148935036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)